Abstract: FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. (PDB) (1). The current release. PDF | FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB). The database currently. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB) [1]. The database currently .

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Families of Structurally Similar Proteins database – Wikipedia

In this example, 31 PDB chains clustered into the sequence family represented by bovine pancreatic trypsin inhibitor 9PTI have been extracted from the table. Structure of the first C2 domain of synaptotagmin I: SRS–an indexing and retrieval tool for flat file data libraries.

As expected from the high sequence identity, the folds of both of the 1AAP chains and that of 9PTI are as good as identical 1. The FSSP data sets can be obtained by anonymous ftp from ftp.

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Academic redistribution of single files or of the entire database is permitted.

Protein structure comparison by alignment of distance matrices. Holm L, Sander C. By using this site, you agree to the Terms of Use and Privacy Policy. Unique features of the globin amino acid sequences.

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ShindyalovPhilip E. A multiple sequence alignment of four protein families: Identification and classification of protein fold families. By using this site, you agree to the Datavase of Use and Privacy Policy.

Associated Data Supplementary Materials. No inclusion in other databases or database services, academic or other, without explicit permission of the authors.

Families of Structurally Similar Proteins database

Skip to search form Skip to main content. MontelioneMark Gerstein Current opinion in chemical biology Topics Discussed in This Paper. Datanase agree to the terms and conditions.

Databade FSSP database of structurally aligned protein fold families. Michael SauderJonathan W. Structural alignment defines the register of each of the families indicated in the FSSP column relative to p21 ras.

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GTPase domains of ras p21 oncogene protein and elongation factor Tu: All structured data from the main, property and databaze namespaces is available under the Creative Commons CC0 License ; text in the other namespaces is available under the Creative Commons Attribution-ShareAlike License ; additional terms may apply.

Firing squad fszp problem Search for additional papers on this topic. From Wikipedia, the free encyclopedia. There are further hypertext links to functional annotations and literature references via SRS The major new developments since last year 5 are continuous updates of the database and easy access to the data using browsers on the World Wide Web WWW.

Vaisman 3rd International Symposium on Voronoi…. The Protein Data Bank: Form and Content of the Database.

Identification and classification of protein fold databaxe. National Center for Biotechnology InformationU.